CRAN/E | rrnni

rrnni

Manipulate with RNNI Tree Space

Installation

About

Calculate RNNI distance between and manipulate with ranked trees. RNNI stands for Ranked Nearest Neighbour Interchange and is an extension of the classical NNI space (space of trees created by the NNI moves) to ranked trees, where internal nodes are ordered according to their heights (usually assumed to be times). The RNNI distance takes the tree topology into account, as standard NNI does, but also penalizes changes in the order of internal nodes, i.e. changes in the order of times of evolutionary events. For more information about the RNNI space see: Gavryushkin et al. (2018) doi:10.1007/s00285-017-1167-9, Collienne & Gavryushkin (2021) doi:10.1007/s00285-021-01567-5, Collienne et al. (2021) doi:10.1007/s00285-021-01685-0, and Collienne (2021) .

rrnni.biods.org/
Bug report File report

Key Metrics

Version 0.1.1
Published 2023-08-25 414 days ago
Needs compilation? yes
License GPL (≥ 3)
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Maintainer

Maintainer

Jiří C. Moravec

Authors

Jiří C. Moravec

aut / cre

Lena Collienne

aut

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

rrnni archive

Imports

methods
ape

Suggests

testthat ≥ 3.0.0