scAnnotate
An Automated Cell Type Annotation Tool for Single-Cell RNA-Sequencing Data
An entirely data-driven cell type annotation tools, which requires training data to learn the classifier, but not biological knowledge to make subjective decisions. It consists of three steps: preprocessing training and test data, model fitting on training data, and cell classification on test data. See Xiangling Ji,Danielle Tsao, Kailun Bai, Min Tsao, Li Xing, Xuekui Zhang.(2022)
- Version0.3
- R version≥ 4.0.0
- LicenseGPL-3
- Needs compilation?No
- Last release03/14/2024
Documentation
Team
Xuekui Zhang
Xiangling Ji
Show author detailsRolesAuthorDanielle Tsao
Show author detailsRolesAuthorKailun Bai
Show author detailsRolesContributorMin Tsao
Show author detailsRolesAuthorLi Xing
Show author detailsRolesAuthor
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- Depends1 package
- Imports5 packages
- Suggests3 packages