scAnnotate

An Automated Cell Type Annotation Tool for Single-Cell RNA-Sequencing Data

CRAN Package

An entirely data-driven cell type annotation tools, which requires training data to learn the classifier, but not biological knowledge to make subjective decisions. It consists of three steps: preprocessing training and test data, model fitting on training data, and cell classification on test data. See Xiangling Ji,Danielle Tsao, Kailun Bai, Min Tsao, Li Xing, Xuekui Zhang.(2022) for more details.

  • Version0.3
  • R version≥ 4.0.0
  • LicenseGPL-3
  • Needs compilation?No
  • Last release03/14/2024

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  • Depends1 package
  • Imports5 packages
  • Suggests3 packages