scGOclust
Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq
Traditional methods for analyzing single cell RNA-seq datasets focus solely on gene expression, but this package introduces a novel approach that goes beyond this limitation. Using Gene Ontology terms as features, the package allows for the functional profile of cell populations, and comparison within and between datasets from the same or different species. Our approach enables the discovery of previously unrecognized functional similarities and differences between cell types and has demonstrated success in identifying cell types' functional correspondence even between evolutionarily distant species.
- Version0.2.1
- R versionunknown
- LicenseGPL (≥ 3)
- Needs compilation?No
- Last release01/24/2024
Documentation
Team
Yuyao Song
Irene Papatheodorou
Show author detailsRolesAuthor, Thesis advisor
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- Imports8 packages
- Suggests5 packages