scSpatialSIM

A Point Pattern Simulator for Spatial Cellular Data

CRAN Package

Single cell resolution data has been valuable in learning about tissue microenvironments and interactions between cells or spots. This package allows for the simulation of this level of data, be it single cell or ‘spots’, in both a univariate (single metric or cell type) and bivariate (2 or more metrics or cell types) ways. As more technologies come to marker, more methods will be developed to derive spatial metrics from the data which will require a way to benchmark methods against each other. Additionally, as the field currently stands, there is not a gold standard method to be compared against. We set out to develop an R package that will allow users to simulate point patterns that can be biologically informed from different tissue domains, holes, and varying degrees of clustering/colocalization. The data can be exported as spatial files and a summary file (like 'HALO'). https://github.com/FridleyLab/scSpatialSIM/.

  • Version0.1.3.4
  • R versionunknown
  • LicenseMIT
  • Needs compilation?No
  • Last release10/01/2024

Documentation


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Insights

Last 30 days

This package has been downloaded 180 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 4 times.

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0 downloadsFeb 9, 2025
0 downloadsFeb 10, 2025
0 downloadsFeb 11, 2025
0 downloadsFeb 12, 2025
5 downloadsFeb 13, 2025
7 downloadsFeb 14, 2025
3 downloadsFeb 15, 2025
13 downloadsFeb 16, 2025
7 downloadsFeb 17, 2025
9 downloadsFeb 18, 2025
6 downloadsFeb 19, 2025
13 downloadsFeb 20, 2025
4 downloadsFeb 21, 2025
7 downloadsFeb 22, 2025
11 downloadsFeb 23, 2025
3 downloadsFeb 24, 2025
6 downloadsFeb 25, 2025
3 downloadsFeb 26, 2025
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4 downloadsFeb 28, 2025
3 downloadsMar 1, 2025
5 downloadsMar 2, 2025
4 downloadsMar 3, 2025
11 downloadsMar 4, 2025
9 downloadsMar 5, 2025
4 downloadsMar 6, 2025
3 downloadsMar 7, 2025
2 downloadsMar 8, 2025
3 downloadsMar 9, 2025
2 downloadsMar 10, 2025
9 downloadsMar 11, 2025
6 downloadsMar 12, 2025
9 downloadsMar 13, 2025
4 downloadsMar 14, 2025
0 downloadsMar 15, 2025
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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 2,191 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Oct 02, 2024 with 56 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


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Dependencies

  • Imports10 packages
  • Suggests4 packages