scTEP
Single-Cell Trajectory Inference using Ensemble Pseudotimes
A single-cell trajectory inference method using 'Autoencoder' and Minimum Spanning Tree (MST) from high dimensional 'scRNA-Seq' data. The software run clustering methods six times using 'scDHA' with the number of clusters set from 6 to 10. Then, the 'scTEP' calculates pseudotime based on multiple clustering results. Lastly, the 'scTEP' generates trajectory using MST algorithm and fine-tunes it according to the pseudotime of clusters.
- Version0.1.0
- R version≥ 3.6.0
- LicenseLGPL-2
- LicenseLGPL-2.1
- LicenseLGPL-3
- Needs compilation?No
- Last release09/26/2022
Documentation
Team
Yifan Zhang
Duc Tran
Show author detailsRolesAuthorTin Nguyen
Show author detailsRolesfndSergiu M. Dascalu
Show author detailsRolesfndFrederick C. Harris
Jr.
Show author detailsRolesfnd
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- Depends1 package
- Imports14 packages
- Suggests2 packages