scoper
Spectral Clustering-Based Method for Identifying B Cell Clones
Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) doi:10.1093/bioinformatics/bty235. Nouri N and Kleinstein SH (2019) doi:10.1101/788620. Gupta NT, et al. (2017) doi:10.4049/jimmunol.1601850.
- Version1.3.0
- R versionunknown
- LicenseAGPL-3
- Needs compilation?Yes
- scoper citation info
- Last release10/06/2023
Documentation
Team
Susanna Marquez
MaintainerShow author detailsJason Vander Heiden
Show author detailsRolesAuthorNima Nouri
Show author detailsRolesAuthorEdel Aron
Show author detailsRolesContributorSteven Kleinstein
Show author detailsRolesAuthor, Copyright holderGisela Gabernet
Show author detailsRolesContributor
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- Depends1 package
- Imports11 packages
- Suggests3 packages
- Linking To1 package