sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija (2019) doi:10.1186/s13059-019-1874-1, and Choudhary and Satija (2022) doi:10.1186/s13059-021-02584-9 for more details.

Last 30 days

This package has been downloaded 28,276 times in the last 30 days. The downloads are officially high enough to crash an underfunded departmental server. Quite an accomplishment! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 1,109 times.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 322,311 times in the last 365 days. This is the kind of download count that makes grant committees nod approvingly. A job well done, even the stoic reviewers might be impressed! The day with the most downloads was Feb 12, 2025 with 2,714 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.