sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija (2019)
- Version0.4.1
- R version≥ 3.6.0
- LicenseGPL-3
- Licensefile LICENSE
- Needs compilation?Yes
- sctransform citation info
- Last release10/19/2023
Documentation
Team
Saket Choudhary
Christoph Hafemeister
Rahul Satija
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- Depends1 package
- Imports11 packages
- Enhances1 package
- Suggests3 packages
- Linking To2 packages
- Reverse Imports2 packages
- Reverse Suggests5 packages