CRAN/E | seq2R

seq2R

Simple Method to Detect Compositional Changes in Genomic Sequences

Installation

About

This software is useful for loading '.fasta' or '.gbk' files, and for retrieving sequences from 'GenBank' dataset . This package allows to detect differences or asymmetries based on nucleotide composition by using local linear kernel smoothers. Also, it is possible to draw inference about critical points (i. e. maximum or minimum points) related with the derivative curves. Additionally, bootstrap methods have been used for estimating confidence intervals and speed computational techniques (binning techniques) have been implemented in 'seq2R'.

Key Metrics

Version 2.0.0
R ≥ 2.15.1
Published 2023-04-20 541 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks seq2R results

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Maintainer

Maintainer

Nora M. Villanueva

Authors

Nora M. Villanueva

aut / cre

Marta Sestelo

aut

Alan Miller

ctb

(FORTRAN code lsq.f90: weighted least-squares module)

Material

Reference manual
Package source

macOS

r-devel

arm64

r-release

arm64

r-oldrel

arm64

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrelnot available

x86_64

Old Sources

seq2R archive

Depends

R ≥ 2.15.1

Imports

seqinr