Installation
About
Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
| Citation | seqminer citation info |
| zhanxw.github.io/seqminer/ | |
| Copyright | We have used the following software and made minimal necessary changes: tabix, Heng Li <[email protected]> (MIT license), SQLite (Public Domain), Zstandard (BSD license). For tabix, we removed standard IO related functions, e.g. printf, fprintf ; also changed its un-safe pointer arithmetics. For zstandard, we removed compiler (clang, MSVC) specific preprocessing flags. |
| System requirements | C++17, zlib headers and libraries, GNU make, optionally also bzip2 and POSIX-compliant regex functions. |
| Bug report | File report |
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Maintainer
| Maintainer | Xiaowei Zhan |