shazam

Immunoglobulin Somatic Hypermutation Analysis

CRAN Package

Provides a computational framework for analyzing mutations in immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of antigen-driven selection pressure, mutational load quantification, building of somatic hypermutation (SHM) models, and model-dependent distance calculations. Also includes empirically derived models of SHM for both mice and humans. Citations: Gupta and Vander Heiden, et al (2015), Yaari, et al (2012), Yaari, et al (2013), Cui, et al (2016).


Documentation


Team


Insights

Last 30 days

This package has been downloaded 802 times in the last 30 days. Not bad! The download count is somewhere between 'small-town buzz' and 'moderate academic conference'. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 27 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
21 downloadsMar 4, 2025
67 downloadsMar 5, 2025
27 downloadsMar 6, 2025
13 downloadsMar 7, 2025
6 downloadsMar 8, 2025
7 downloadsMar 9, 2025
31 downloadsMar 10, 2025
25 downloadsMar 11, 2025
16 downloadsMar 12, 2025
17 downloadsMar 13, 2025
13 downloadsMar 14, 2025
52 downloadsMar 15, 2025
33 downloadsMar 16, 2025
28 downloadsMar 17, 2025
43 downloadsMar 18, 2025
30 downloadsMar 19, 2025
17 downloadsMar 20, 2025
45 downloadsMar 21, 2025
20 downloadsMar 22, 2025
11 downloadsMar 23, 2025
70 downloadsMar 24, 2025
22 downloadsMar 25, 2025
21 downloadsMar 26, 2025
18 downloadsMar 27, 2025
77 downloadsMar 28, 2025
6 downloadsMar 29, 2025
6 downloadsMar 30, 2025
16 downloadsMar 31, 2025
17 downloadsApr 1, 2025
27 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
6
77

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 9,239 times in the last 365 days. That's a lot of interest! Someone might even write a blog post about it. The day with the most downloads was Jan 08, 2025 with 138 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends1 package
  • Imports18 packages
  • Suggests3 packages
  • Reverse Imports2 packages