shinySIR

Interactive Plotting for Mathematical Models of Infectious Disease Spread

CRAN Package

Provides interactive plotting for mathematical models of infectious disease spread. Users can choose from a variety of common built-in ordinary differential equation (ODE) models (such as the SIR, SIRS, and SIS models), or create their own. This latter flexibility allows 'shinySIR' to be applied to simple ODEs from any discipline. The package is a useful teaching tool as students can visualize how changing different parameters can impact model dynamics, with minimal knowledge of coding in R. The built-in models are inspired by those featured in Keeling and Rohani (2008) doi:10.2307/j.ctvcm4gk0 and Bjornstad (2018) doi:10.1007/978-3-319-97487-3.


Documentation


Team


Insights

Last 30 days

This package has been downloaded 346 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 48 times.

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0 downloadsMar 2, 2025
5 downloadsMar 3, 2025
39 downloadsMar 4, 2025
10 downloadsMar 5, 2025
4 downloadsMar 6, 2025
22 downloadsMar 7, 2025
13 downloadsMar 8, 2025
1 downloadsMar 9, 2025
9 downloadsMar 10, 2025
15 downloadsMar 11, 2025
10 downloadsMar 12, 2025
35 downloadsMar 13, 2025
2 downloadsMar 14, 2025
8 downloadsMar 15, 2025
4 downloadsMar 16, 2025
27 downloadsMar 17, 2025
6 downloadsMar 18, 2025
5 downloadsMar 19, 2025
8 downloadsMar 20, 2025
9 downloadsMar 21, 2025
7 downloadsMar 22, 2025
2 downloadsMar 23, 2025
8 downloadsMar 24, 2025
18 downloadsMar 25, 2025
6 downloadsMar 26, 2025
7 downloadsMar 27, 2025
9 downloadsMar 28, 2025
2 downloadsMar 29, 2025
5 downloadsMar 30, 2025
2 downloadsMar 31, 2025
48 downloadsApr 1, 2025
0 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
1
48

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 2,681 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Apr 24, 2024 with 49 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends5 packages
  • Suggests3 packages