CRAN/E | shinyTempSignal

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals

Installation

About

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.

Citation shinyTempSignal citation info
github.com/YuLab-SMU/shinyTempSignal
www.sciencedirect.com/science/article/pii/S167385272400033X
Bug report File report

Key Metrics

Version 0.0.8
R ≥ 3.3.0
Published 2024-03-06 215 days ago
Needs compilation? no
License GPL-3
CRAN checks shinyTempSignal results

Downloads

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Maintainer

Maintainer

Guangchuang Yu

Authors

Guangchuang Yu

aut / cre / cph

Xiao Luo

ctb

Li Zhan

ctb

Xuanan Zhu

ctb

Jianfeng Lin

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

shinyTempSignal introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

shinyTempSignal archive

Depends

R ≥ 3.3.0

Imports

ape
forecast
ggplot2
ggprism
ggpmisc
ggtree
golem ≥0.3.1
shiny ≥ 1.6.0
shinydashboard
shinyjs
shinyWidgets
stats
treeio
yulab.utils ≥ 0.1.4
nlme

Suggests

attempt
conflicted
config ≥ 0.3.1
glue
htmltools
knitr
prettydoc
processx
rmarkdown
testthat ≥ 3.0.0