shinyTempSignal
Explore Temporal and Other Phylogenetic Signals
Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.
- GitHub
- https://www.sciencedirect.com/science/article/pii/S167385272400033X
- File a bug report
- shinyTempSignal results
- shinyTempSignal.pdf
- Version0.0.8
- R version≥ 3.3.0
- LicenseGPL-3
- Needs compilation?No
- shinyTempSignal citation info
- Last release03/06/2024
Documentation
Team
Guangchuang Yu
Xiao Luo
Show author detailsRolesContributorLi Zhan
Show author detailsRolesContributorXuanan Zhu
Show author detailsRolesContributorJianfeng Lin
Show author detailsRolesContributor
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- Depends1 package
- Imports15 packages
- Suggests10 packages