CRAN/E | sicegar

sicegar

Analysis of Single-Cell Viral Growth Curves

Installation

About

Aims to quantify time intensity data by using sigmoidal and double sigmoidal curves. It fits straight lines, sigmoidal, and double sigmoidal curves on to time vs intensity data. Then all the fits are used to make decision on which model best describes the data. This method was first developed in the context of single-cell viral growth analysis (for details, see Caglar et al. (2018) doi:10.7717/peerj.4251), and the package name stands for "SIngle CEll Growth Analysis in R".

Citation sicegar citation info
github.com/wilkelab/sicegar
Bug report File report

Key Metrics

Version 0.2.4
Published 2021-05-08 1253 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks sicegar results

Downloads

Yesterday 5 -50%
Last 7 days 34 -17%
Last 30 days 162 -30%
Last 90 days 588 -16%
Last 365 days 2.817 -13%

Maintainer

Maintainer

Claus O. Wilke

Authors

M. Umut Caglar

aut

Claus O. Wilke

aut / cre

Material

README
Reference manual
Package source

Vignettes

Calculation of additional parameters of interest
Identifying the best-fitting model category
Fitting individual models
Introduction
Plotting the fitted models

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

sicegar archive

Imports

dplyr
minpack.lm
fBasics
ggplot2
stats

Suggests

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