stableGR
A Stable Gelman-Rubin Diagnostic for Markov Chain Monte Carlo
Practitioners of Bayesian statistics often use Markov chain Monte Carlo (MCMC) samplers to sample from a posterior distribution. This package determines whether the MCMC sample is large enough to yield reliable estimates of the target distribution. In particular, this calculates a Gelman-Rubin convergence diagnostic using stable and consistent estimators of Monte Carlo variance. Additionally, this uses the connection between an MCMC sample's effective sample size and the Gelman-Rubin diagnostic to produce a threshold for terminating MCMC simulation. Finally, this informs the user whether enough samples have been collected and (if necessary) estimates the number of samples needed for a desired level of accuracy. The theory underlying these methods can be found in "Revisiting the Gelman-Rubin Diagnostic" by Vats and Knudson (2018)
- Version1.2
- R version≥ 3.5
- LicenseGPL-3
- Needs compilation?No
- Last release10/07/2022
Team
Christina Knudson
Dootika Vats
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- Depends2 packages
- Imports1 package
- Reverse Imports1 package