vcfR
Manipulate and Visualize VCF Data
Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.
- Version1.15.0
- R version≥ 3.0.1
- LicenseGPL-3
- Needs compilation?Yes
- vcfR citation info
- Last release12/08/2023
Documentation
Team
Brian J. Knaus
Niklaus J. Grunwald
Eric C. Anderson
David J. Winter
Show author detailsRolesContributorZhian N. Kamvar
Javier F. Tabima
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- Depends1 package
- Imports15 packages
- Suggests9 packages
- Linking To1 package
- Reverse Imports18 packages
- Reverse Suggests7 packages