CRAN/E | Rmagic

Rmagic

MAGIC - Markov Affinity-Based Graph Imputation of Cells

Installation

About

MAGIC (Markov affinity-based graph imputation of cells) is a method for addressing technical noise in single-cell data, including under-sampling of mRNA molecules, often termed "dropout" which can severely obscure important gene-gene relationships. MAGIC shares information across similar cells, via data diffusion, to denoise the cell count matrix and fill in missing transcripts. Read more: van Dijk et al. (2018) doi:10.1016/j.cell.2018.05.061.

Citation Rmagic citation info

Key Metrics

Version 2.0.3
R ≥ 3.3
Published 2019-11-21 1671 days ago
Needs compilation? no
License GPL-2
License File
CRAN checks Rmagic results

Downloads

Yesterday 0
Last 7 days 12 +9%
Last 30 days 45 -12%
Last 90 days 155 -29%
Last 365 days 724 -74%

Maintainer

Maintainer

Scott Gigante

Authors

David van Dijk

aut

Scott Gigante

cre

Material

README
Reference manual
Package source

In Views

MissingData

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Rmagic archive

Depends

R ≥ 3.3
Matrix ≥ 1.2-0

Imports

methods
stats
reticulate ≥ 1.4
ggplot2

Suggests

Seurat ≥ 3.0.0
readr
viridis
phateR

Reverse Imports

scRecover