CRAN/E | SCdeconR

SCdeconR

Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference

Installation

About

Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.

github.com/Liuy12/SCdeconR/
liuy12.github.io/SCdeconR/

Key Metrics

Version 1.0.0
R ≥ 2.10
Published 2024-03-22 88 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks SCdeconR results

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Maintainer

Maintainer

Yuanhang Liu

Authors

Yuanhang Liu

aut / cre

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

dplyr
edgeR
foreach
ggplot2
R ≥ 2.10
Seurat

Imports

data.table
gtools
harmony
MASS
Matrix
NMF
reshape2
Biobase
mgcv
grDevices
glmGamPoi

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